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Updated annotation available

There is updated annotation for this gene available here.

Description

breast cancer 1, early onset

Synonyms

BRCC1, FANCS, PPP1R53, RNF53, BRCC1, FANCS, PPP1R53, RNF53

Location
INSDC coordinates

chromosome:VEGA61:CM000679.2:43044295:43125483:1

About this gene

This gene has 29 transcripts (splice variants).

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtFlags
BRCA1-001OTTHUMT0000034879870941863aaOTTHUMP00000212143
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS11453P38398
BRCA1-005OTTHUMT0000034880259361884aaOTTHUMP00000212147
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS11456-
BRCA1-006OTTHUMT0000034880357321816aaOTTHUMP00000212148
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS11459-
BRCA1-007OTTHUMT000003488043273699aaOTTHUMP00000212149
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS11455-
BRCA1-014OTTHUMT000003488112379759aaOTTHUMP00000212155
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS11454A0A024R1V0
BRCA1-012OTTHUMT0000034880944971399aaOTTHUMP00000275457
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q5YLB2
BRCA1-029OTTHUMT000004762753668721aaOTTHUMP00000275469
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A0A024R1Z8
BRCA1-011OTTHUMT000003488082108649aaOTTHUMP00000212153
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E7EWN5 CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
BRCA1-004OTTHUMT000003488011980622aaOTTHUMP00000212146
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E9PH68 CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
BRCA1-009OTTHUMT000003488061972623aaOTTHUMP00000212151
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E7EUM2 CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
BRCA1-008OTTHUMT000003488051948572aaOTTHUMP00000212150
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-B7ZA85 CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
BRCA1-013OTTHUMT000003488101612473aaOTTHUMP00000212154
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q3B891 CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
BRCA1-015OTTHUMT000003488121495498aaOTTHUMP00000212156
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-H0Y8B8 CDS 5' and 3' incomplete5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.
BRCA1-024OTTHUMT000004531141282354aaOTTHUMP00000265375
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-K7EPC7
BRCA1-018OTTHUMT00000348815958319aaOTTHUMP00000212159
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-H0Y8D8 CDS 5' and 3' incomplete5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.
BRCA1-019OTTHUMT00000348816800266aaOTTHUMP00000212160
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-H0Y881 CDS 5' and 3' incomplete5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.
BRCA1-023OTTHUMT00000453113781173aaOTTHUMP00000265374
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C6YB45
BRCA1-003OTTHUMT00000348800779177aaOTTHUMP00000212145
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C9IZW4 CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
BRCA1-017OTTHUMT00000348814769222aaOTTHUMP00000212158
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E7EQW4 CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
BRCA1-022OTTHUMT00000348819726242aaOTTHUMP00000212162
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-H0Y850 CDS 5' and 3' incomplete5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.
BRCA1-027OTTHUMT0000047552671823aaOTTHUMP00000275365
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-G1UI37 CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
BRCA1-025OTTHUMT0000045311556396aaOTTHUMP00000265376
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-K7EJW3
BRCA1-016OTTHUMT0000034881345598aaOTTHUMP00000212157
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E7ENB7 CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
BRCA1-026OTTHUMT000004531161312437aaOTTHUMP00000265377
 
Non stop decay
-A0A0A0MSN1 CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.
BRCA1-010OTTHUMT00000348807569363aaOTTHUMP00000212152
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
--
BRCA1-002OTTHUMT00000348799158459aaOTTHUMP00000212144
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-E9PC22
BRCA1-020OTTHUMT0000034881758263aaOTTHUMP00000212161
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
--
BRCA1-028OTTHUMT00000475525375No protein-
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
--
BRCA1-021OTTHUMT00000348818561No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
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Gene-based displays