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Updated annotation available

There is updated annotation for this gene available here.

Description

synaptic Ras GTPase activating protein 1 homolog (rat)

Synonyms

KIAA1938, RASA5, SYNGAP

Location
INSDC coordinates

chromosome:VEGA57:CM000668.2:33420070:33453689:1

Transcripts

This gene has 11 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDLengthProteinBiotypeCCDSUniProtFlags
SYNGAP1-001OTTHUMT000000761515916 bp1343 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS34434Q96PV0
SYNGAP1-003OTTHUMT000002589014339 bp1284 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
--
SYNGAP1-009OTTHUMT000003426773847 bp1279 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-B7ZCA0 CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
SYNGAP1-007OTTHUMT00000258905593 bp76 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
--CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.
SYNGAP1-010OTTHUMT000003426784678 bp No protein product
 
ArtifactError in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the VEGA/Havana project.
--
SYNGAP1-011OTTHUMT000004677313929 bp No protein product
 
ArtifactError in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the VEGA/Havana project.
--
SYNGAP1-006OTTHUMT000003426761913 bp No protein product
 
ArtifactError in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the VEGA/Havana project.
--
SYNGAP1-004OTTHUMT000002589024556 bp1284 aa (view)
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
--
SYNGAP1-005OTTHUMT00000258903260 bp No protein product
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
--
SYNGAP1-002OTTHUMT000002589002061 bp No protein product
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
--
SYNGAP1-008OTTHUMT00000258906394 bp No protein product
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
--

Gene-based displays