HumanVega Home

Updated annotation available

There is updated annotation for this gene available here.

Description

synaptic Ras GTPase activating protein 1 homolog (rat)

Synonyms

KIAA1938, RASA5, SYNGAP, KIAA1938, RASA5, SYNGAP

Location

Chromosome 6: 33,420,070-33,457,541 forward strand.

View alleles of this gene on alternate assemblies

INSDC coordinates

chromosome:VEGA61:CM000668.2:33420070:33457541:1

About this gene

This gene has 10 transcripts (splice variants), 1 gene allele, 1 orthologue and 10 paralogues.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtFlags
SYNGAP1-001OTTHUMT0000007615198621343aaOTTHUMP00000029119
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS34434Q96PV0
SYNGAP1-010OTTHUMT0000034267858281285aaOTTHUMP00000278516
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
--
SYNGAP1-003OTTHUMT0000025890143391284aaOTTHUMP00000165802
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
--
SYNGAP1-007OTTHUMT0000025890542641299aaOTTHUMP00000275564
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
--
SYNGAP1-009OTTHUMT0000034267739301307aaOTTHUMP00000209046
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-B7ZCA0 CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
SYNGAP1-006OTTHUMT000003426761912No protein-
 
ArtifactError in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the VEGA/Havana project.
--
SYNGAP1-004OTTHUMT0000025890245561284aaOTTHUMP00000275563
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-A0A0A0MQZ2 CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.
SYNGAP1-005OTTHUMT00000258903260No protein-
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
--
SYNGAP1-002OTTHUMT000002589002073No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
--
SYNGAP1-008OTTHUMT00000258906394No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
--

Gene-based displays