Description
CCR4-NOT transcription complex, subunit 1
Synonyms
KIAA1007, CDC39, NOT1H, AD-005
Location
Chromosome 16: 58,519,951-58,629,886 reverse strand.
VEGA68:CM000678.2
About this gene
This gene has 23 transcripts (splice variants) and 1 orthologue.
Transcripts
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt | Flags |
|---|---|---|---|---|---|---|---|---|
| CNOT1-001 | OTTHUMT00000257385.3 | 8471 | 2376aa | OTTHUMP00000164723 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS10799 | A5YKK6 | |
| CNOT1-003 | OTTHUMT00000422244.1 | 7660 | 2371aa | OTTHUMP00000250141 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS58468 | - | |
| CNOT1-002 | OTTHUMT00000422242.1 | 4999 | 1551aa | OTTHUMP00000250140 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS45501 | - | |
| CNOT1-019 | OTTHUMT00000422371.1 | 1317 | 439aa | OTTHUMP00000250169 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete |
| CNOT1-023 | OTTHUMT00000422465.1 | 831 | 277aa | OTTHUMP00000250222 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete |
| CNOT1-016 | OTTHUMT00000422374.2 | 722 | 241aa | OTTHUMP00000250172 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete |
| CNOT1-010 | OTTHUMT00000422277.2 | 582 | 62aa | OTTHUMP00000250148 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| CNOT1-022 | OTTHUMT00000422382.2 | 578 | 193aa | OTTHUMP00000250174 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete |
| CNOT1-017 | OTTHUMT00000422373.1 | 553 | 185aa | OTTHUMP00000250171 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete |
| CNOT1-008 | OTTHUMT00000422266.4 | 535 | 25aa | OTTHUMP00000250145 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| CNOT1-007 | OTTHUMT00000422265.3 | 385 | 25aa | OTTHUMP00000250144 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| CNOT1-021 | OTTHUMT00000422380.1 | 1425 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
| CNOT1-005 | OTTHUMT00000422264.1 | 7830 | 2150aa | OTTHUMP00000250143 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | |
| CNOT1-020 | OTTHUMT00000422376.1 | 739 | 96aa | OTTHUMP00000250173 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | |
| CNOT1-018 | OTTHUMT00000422372.1 | 567 | 68aa | OTTHUMP00000250170 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| CNOT1-015 | OTTHUMT00000422375.1 | 906 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| CNOT1-009 | OTTHUMT00000422279.1 | 496 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| CNOT1-006 | OTTHUMT00000422267.1 | 304 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| CNOT1-004 | OTTHUMT00000422263.1 | 2280 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| CNOT1-011 | OTTHUMT00000422278.1 | 599 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| CNOT1-012 | OTTHUMT00000422276.1 | 551 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| CNOT1-014 | OTTHUMT00000422274.1 | 493 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| CNOT1-013 | OTTHUMT00000422275.1 | 458 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - |
