Description
ubiquitin specific peptidase 40
Synonyms
FLJ10785
Location
Chromosome 2: 233,475,091-233,566,782 reverse strand.
VEGA68:CM000664.2
About this gene
This gene has 17 transcripts (splice variants) and 1 orthologue.
Transcripts
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt | Flags |
|---|---|---|---|---|---|---|---|---|
| USP40-001 | OTTHUMT00000330042.3 | 5692 | 1235aa | OTTHUMP00000216386 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | Q9NVE5 | |
| USP40-017 | OTTHUMT00000397235.2 | 3744 | 1235aa | OTTHUMP00000237439 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | Q9NVE5 | |
| USP40-004 | OTTHUMT00000330045.2 | 1946 | 163aa | OTTHUMP00000203357 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | |
| USP40-005 | OTTHUMT00000330046.1 | 1047 | 246aa | OTTHUMP00000203336 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| USP40-002 | OTTHUMT00000330043.3 | 628 | 98aa | OTTHUMP00000216387 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | C9JK14 | |
| USP40-015 | OTTHUMT00000330056.1 | 453 | 98aa | OTTHUMP00000203339 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| USP40-013 | OTTHUMT00000330054.2 | 348 | 116aa | OTTHUMP00000203338 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete |
| USP40-003 | OTTHUMT00000330044.1 | 2584 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
| USP40-011 | OTTHUMT00000330052.1 | 670 | 97aa | OTTHUMP00000203337 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| USP40-012 | OTTHUMT00000330053.1 | 665 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| USP40-009 | OTTHUMT00000330050.1 | 568 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| USP40-014 | OTTHUMT00000330055.1 | 185 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| USP40-006 | OTTHUMT00000330047.1 | 2722 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| USP40-007 | OTTHUMT00000330048.2 | 933 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| USP40-008 | OTTHUMT00000330049.2 | 794 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| USP40-010 | OTTHUMT00000330051.1 | 641 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| USP40-016 | OTTHUMT00000330057.1 | 590 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - |
