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Summary
- Splice variants
- Transcript comparison
Sequence
Comparative Genomics
- Genomic alignments
- Orthologues
- Alt. alleles
Ontologies
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Gene: CHPF2 OTTHUMG00000157380

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Description

chondroitin polymerizing factor 2

Synonyms

CSGlcA-T, ChSy-3, KIAA1402

Location

Chromosome 7: 151,232,489-151,238,827 forward strand.

VEGA68:CM000669.2

About this gene

This gene has 5 transcripts (splice variants), 2 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
CHPF2-001	OTTHUMT00000348648.3	3978	772aa	OTTHUMP00000212063	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS34779	Q9P2E5
CHPF2-002	OTTHUMT00000348842.1	2709	764aa	OTTHUMP00000212170	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS64803	G5E9W2
CHPF2-003	OTTHUMT00000348843.2	548	90aa	OTTHUMP00000212171	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
CHPF2-005	OTTHUMT00000349266.2	3549	No protein	-	<p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact	-	-
CHPF2-004	OTTHUMT00000348844.1	782	123aa	OTTHUMP00000212172	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	H7C5L5	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

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Summary

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