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Updated annotation

The annotation for this transcript is newer than that present in Ensembl.

Description

synaptic Ras GTPase activating protein 1 homolog (rat)

Location
Gene

This transcript is a product of gene OTTHUMG00000031096

This gene has 11 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDLength (bp)Protein IDLength (aa)BiotypeCDS incompleteCCDS
SYNGAP1-001OTTHUMT000000761515916OTTHUMP000000291191343Protein codingGenes and/or transcript that contains an open reading frame (ORF).-CCDS34434
SYNGAP1-003OTTHUMT000002589014339OTTHUMP000001658021284Protein codingGenes and/or transcript that contains an open reading frame (ORF).--
SYNGAP1-009OTTHUMT000003426773847OTTHUMP000002090461279Protein codingGenes and/or transcript that contains an open reading frame (ORF).3'-
SYNGAP1-007OTTHUMT00000258905593OTTHUMP0000027556476Protein codingGenes and/or transcript that contains an open reading frame (ORF).5'-
SYNGAP1-010OTTHUMT000003426784678No protein product-ArtifactError in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the VEGA/Havana project.--
SYNGAP1-011OTTHUMT000004677313929No protein product-ArtifactError in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the VEGA/Havana project.--
SYNGAP1-006OTTHUMT000003426761913No protein product-ArtifactError in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the VEGA/Havana project.--
SYNGAP1-004OTTHUMT000002589024556OTTHUMP000002755631284Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. --
SYNGAP1-005OTTHUMT00000258903260No protein product-Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.--
SYNGAP1-002OTTHUMT000002589002061No protein product-Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.--
SYNGAP1-008OTTHUMT00000258906394No protein product-Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.--
Statistics

Exons: 20 Transcript length: 4,556 bps Translation length: 1,284 residues

Class

nonsense mediated decay [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 4, last modified on 28/02/2014 (Created on 07/04/2006)

Alternative symbols

XXbac-BPG294E21.1-004

Remarks

not organism-supported

Other assemblies

This transcript maps to 33,388,087-33,420,172 in GRCh37 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts
Ensembl transcript having exact match with Havana:
Curation Method

Transcript-based displays