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Updated annotation available

There is updated annotation for this transcript available here.

Description

synaptic Ras GTPase activating protein 1 homolog (rat)

Location
About this transcript

This transcript has 20 exons and is annotated with 24 domains and features.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtFlags
SYNGAP1-001OTTHUMT0000007615198621343aaOTTHUMP00000029119
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS34434Q96PV0
SYNGAP1-010OTTHUMT0000034267858281285aaOTTHUMP00000278516
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
--
SYNGAP1-003OTTHUMT0000025890143391284aaOTTHUMP00000165802
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
--
SYNGAP1-007OTTHUMT0000025890542641299aaOTTHUMP00000275564
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
--
SYNGAP1-009OTTHUMT0000034267739301307aaOTTHUMP00000209046
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-B7ZCA0 CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
SYNGAP1-006OTTHUMT000003426761912No protein-
 
ArtifactError in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the VEGA/Havana project.
--
SYNGAP1-004OTTHUMT0000025890245561284aaOTTHUMP00000275563
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-A0A0A0MQZ2 CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.
SYNGAP1-005OTTHUMT00000258903260No protein-
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
--
SYNGAP1-002OTTHUMT000002589002073No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
--
SYNGAP1-008OTTHUMT00000258906394No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
--
Statistics

Exons: 20 Transcript length: 4,556 bps Translation length: 1,284 residues

Class

nonsense mediated decay [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 4, last modified on 23/09/2014 (Created on 07/04/2006)

Alternative symbols

XXbac-BPG294E21.1-004

Remarks

not organism-supported

CDS start not found

mRNA start not found

Other assemblies

This transcript maps to 33,420,310-33,452,395 in GRCh38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts
Ensembl transcript having exact match with Havana:
Curation Method

Manual annotation from Havana

Transcript-based displays