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Updated annotation available

There is updated annotation for this transcript available here.

Description

synaptic Ras GTPase activating protein 1 homolog (rat)

Synonyms

Location
Gene

This transcript is a product of gene OTTHUMG00000031096

This gene has 11 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDLengthProteinBiotypeCCDSUniProtFlags
SYNGAP1-001OTTHUMT000000761515916 bp1343 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS34434Q96PV0
SYNGAP1-003OTTHUMT000002589014339 bp1284 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
--
SYNGAP1-009OTTHUMT000003426773847 bp1279 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-B7ZCA0 CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
SYNGAP1-007OTTHUMT00000258905593 bp76 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
--CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.
SYNGAP1-010OTTHUMT000003426784678 bp No protein product
 
ArtifactError in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the VEGA/Havana project.
--
SYNGAP1-011OTTHUMT000004677313929 bp No protein product
 
ArtifactError in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the VEGA/Havana project.
--
SYNGAP1-006OTTHUMT000003426761913 bp No protein product
 
ArtifactError in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the VEGA/Havana project.
--
SYNGAP1-004OTTHUMT000002589024556 bp1284 aa (view)
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
--
SYNGAP1-005OTTHUMT00000258903260 bp No protein product
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
--
SYNGAP1-002OTTHUMT000002589002061 bp No protein product
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
--
SYNGAP1-008OTTHUMT00000258906394 bp No protein product
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
--
Statistics

Exons: 3 Transcript length: 260 bps

Class

Putative processed transcript [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 1, last modified on 28/02/2014 (Created on 07/04/2006)

Alternative symbols

XXbac-BPG294E21.1-005

Other assemblies

This transcript maps to 33,438,472-33,440,575 in GRCh38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts
Ensembl transcript having exact match with Havana:
Curation Method

Manual annotation from Havana

Transcript-based displays