Transcript: SERINC5-001 OTTHUMT00000369572.2

Description

serine incorporator 5

Location

Chromosome 5: 80,138,727-80,256,079 reverse strand.

About this transcript

This transcript has 12 exons and is annotated with 15 domains and features.

Gene

This transcript is a product of gene OTTHUMG00000162563 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt
SERINC5-001	OTTHUMT00000369572.2	6479	461aa	OTTHUMP00000222342	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS54874	-
SERINC5-008	OTTHUMT00000485117.1	1441	420aa	OTTHUMP00000279690	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS83009	-
SERINC5-007	OTTHUMT00000370193.4	1906	No protein	-	<p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact	-	-
SERINC5-005	OTTHUMT00000369917.4	1627	417aa	OTTHUMP00000222452	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	-
SERINC5-004	OTTHUMT00000369916.3	1573	456aa	OTTHUMP00000222451	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	A0A0J9YYI4
SERINC5-002	OTTHUMT00000369573.1	547	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
SERINC5-003	OTTHUMT00000369915.1	2767	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 12 Transcript length: 6,479 bps Translation length: 461 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS54874

Class

Known protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 2, last modified on 23/10/2014 (Created on 10/11/2009)

Alternative symbols

CTC-458I2.1-001

Remarks

NP_001167543.1

Other assemblies

This transcript maps to 80,138,727-80,256,079 in GRCh38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENST00000507668

Curation Method

Manual annotation from Havana

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Recent locations

Transcript: SERINC5-001 OTTHUMT00000369572.2

Summary

Transcript-based displays