Transcript: NIPA1-003 OTTHUMT00000415892.1

Description

non imprinted in Prader-Willi/Angelman syndrome 1

Location

Chromosome 15: 22,785,899-22,824,752 forward strand.

About this transcript

This transcript has 5 exons and is annotated with 13 domains and features.

Gene

This transcript is a product of gene OTTHUMG00000129099 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
NIPA1-004	OTTHUMT00000415890.1	7613	254aa	OTTHUMP00000247181	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS73692	A0A024R344
NIPA1-001	OTTHUMT00000251135.2	6567	329aa	OTTHUMP00000159352	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS73691	Q7RTP0
NIPA1-003	OTTHUMT00000415892.1	1675	254aa	OTTHUMP00000247182	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS73692	A0A024R344
NIPA1-005	OTTHUMT00000415891.1	1903	No protein	-	<p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact	-	-
NIPA1-002	OTTHUMT00000415830.1	2799	90aa	OTTHUMP00000247144	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	H0YLP7	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
NIPA1-007	OTTHUMT00000415893.2	582	58aa	OTTHUMP00000247183	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	H0YMY7	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
NIPA1-008	OTTHUMT00000415894.2	575	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
NIPA1-006	OTTHUMT00000415895.1	375	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 5 Transcript length: 1,675 bps Translation length: 254 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS73692

Class

Known protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 1, last modified on 28/02/2014 (Created on 24/05/2011)

Alternative symbols

AC090764.3-003

Other assemblies

This transcript maps to 22,785,899-22,824,752 in GRCh38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENST00000561183

Curation Method

Manual annotation from Havana

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Recent locations

Transcript: NIPA1-003 OTTHUMT00000415892.1

Summary

Transcript-based displays