Transcript: RP4-583P15.15-001 OTTHUMT00000473237.1

Description

novel protein, ZGPAT-LIME1 readthrough

Location

About this transcript

This transcript has 11 exons and is annotated with 17 domains and features.

Gene

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
RP4-583P15.15-004	OTTHUMT00000487960.1	872	290aa	OTTHUMP00000281126	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	A0A0J9YYD9	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
RP4-583P15.15-003	OTTHUMT00000478817.2	507	169aa	OTTHUMP00000277720	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	A0A087WT57	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete
RP4-583P15.15-002	OTTHUMT00000145223.3	3477	No protein	-	<p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact	-	-
RP4-583P15.15-001	OTTHUMT00000473237.1	3119	417aa	OTTHUMP00000274481	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	V9GY48	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Summary

Statistics

Exons: 11 Transcript length: 3,119 bps Translation length: 417 residues

Class

nonsense mediated decay [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 1, last modified on 28/02/2014 (Created on 18/07/2013)

Annotation Attributes

readthrough [Definitions]

Remarks

CDS start not found

mRNA start not found

Other assemblies

This transcript maps to 63,708,864-63,739,103 in GRCh38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENST00000490623

Curation Method

Manual annotation from Havana