Description
procollagen type XI alpha 1
Location
Chromosome 3: 114,030,540-114,220,718 forward strand.
About this gene
This gene has 8 transcripts (splice variants), 5 orthologues and 2 paralogues.
Transcripts
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt | Flags |
|---|---|---|---|---|---|---|---|---|
| Col11a1-001 | OTTMUST00000053888.3 | 7667 | 1804aa | OTTMUSP00000025652 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS17778 | Q61245 | |
| Col11a1-004 | OTTMUST00000053894.2 | 2064 | 567aa | OTTMUSP00000025655 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | E9PVT8 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| Col11a1-005 | OTTMUST00000132111.1 | 2407 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
| Col11a1-003 | OTTMUST00000053893.2 | 2570 | 536aa | OTTMUSP00000065374 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | V9GWX8 | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| Col11a1-008 | OTTMUST00000150566.1 | 675 | 128aa | OTTMUSP00000078066 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| Col11a1-007 | OTTMUST00000132109.1 | 2519 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| Col11a1-002 | OTTMUST00000053889.1 | 2112 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| Col11a1-006 | OTTMUST00000132110.1 | 969 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - |
