Transcript: Brca1-004 OTTMUST00000005872.1

Description

breast cancer 1

Location

Chromosome 11: 101,512,511-101,522,459 reverse strand.

About this transcript

This transcript has 3 exons.

Gene

This transcript is a product of gene OTTMUSG00000002870 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
Brca1-001	OTTMUST00000005869.1	6572	1812aa	OTTMUSP00000002773	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS25474	P48754
Brca1-007	OTTMUST00000119752.2	531	177aa	OTTMUSP00000066509	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	A0A087WPE1	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete
Brca1-005	OTTMUST00000119754.2	355	79aa	OTTMUSP00000066511	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	A0A087WP26	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
Brca1-002	OTTMUST00000005870.2	1917	75aa	OTTMUSP00000066510	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	A0A087WPK5
Brca1-006	OTTMUST00000119753.1	852	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
Brca1-003	OTTMUST00000005871.1	2136	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
Brca1-004	OTTMUST00000005872.1	539	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 3 Transcript length: 539 bps

Class

retained intron [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 1, last modified on 08/11/2013 (Created on 19/07/2004)

Alternative symbols

RP23-328K2.8-004

Other assemblies

This transcript maps to 101,512,511-101,522,459 in GRCm38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENSMUST00000131460

Curation Method

Manual annotation from Havana

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Recent locations

Transcript: Brca1-004 OTTMUST00000005872.1

Summary

Transcript-based displays