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Updated annotation available

There is updated annotation for this transcript available here.

Description

sodium channel voltage-gated type I alpha

Location
About this transcript

This transcript has 27 exons and is annotated with 53 domains and features.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtFlags
Scn1a-004OTTMUST0000003161981161998aaOTTMUSP00000014086
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS38131A2APX6
Scn1a-001OTTMUST0000003161683862009aaOTTMUSP00000014085
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A2APX8
Scn1a-005OTTMUST0000003162059461981aaOTTMUSP00000014087
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A2APX7
Scn1a-003OTTMUST000000316182659502aaOTTMUSP00000072420
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
--CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.
Scn1a-006OTTMUST000000316211690500aaOTTMUSP00000014088
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A2APX9 CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
Scn1a-007OTTMUST000001375953562303aaOTTMUSP00000072445
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
--CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.
Scn1a-002OTTMUST000000316172978No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
--
Statistics

Exons: 27 Transcript length: 8,386 bps Translation length: 2,009 residues

Class

Novel protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 2, last modified on 23/12/2014 (Created on 07/07/2005)

Alternative symbols

RP23-201O18.1-001

Remarks

non canonical U12

not organism-supported

Other assemblies

This transcript maps to 66,270,781-66,410,064 in GRCm38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts
Ensembl transcript having exact match with Havana:
Curation Method

Manual annotation from Havana

Transcript-based displays