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Description

regulatory factor X, 5 (influences HLA class II expression)

Location
About this transcript

This transcript has 11 exons and is annotated with 7 domains and features.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtFlags
Rfx5-017OTTMUST000000826514333658aaOTTMUSP00000044332
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS17598Q9JL61
Rfx5-009OTTMUST000000556752355658aaOTTMUSP00000026691
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS17598Q9JL61
Rfx5-010OTTMUST000000556762350658aaOTTMUSP00000026692
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS17598Q9JL61
Rfx5-004OTTMUST000000470644450303aaOTTMUSP00000021261
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q6DI69
Rfx5-016OTTMUST000000556824367303aaOTTMUSP00000026698
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q6DI69
Rfx5-012OTTMUST00000055678882182aaOTTMUSP00000026694
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D3Z0D4 CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
Rfx5-014OTTMUST00000055680565105aaOTTMUSP00000026696
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D3YZK7 CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
Rfx5-015OTTMUST0000005568153891aaOTTMUSP00000026697
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D3YTK4 CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
Rfx5-013OTTMUST0000005567953695aaOTTMUSP00000026695
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D3YVW1 CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
Rfx5-005OTTMUST00000047065486131aaOTTMUSP00000021262
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-K4DI79 CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
Rfx5-001OTTMUST00000047061401441aaOTTMUSP00000038518
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-D6RDE5
Rfx5-006OTTMUST0000004706670541aaOTTMUSP00000038519
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-D6RDE5
Rfx5-018OTTMUST0000008265252541aaOTTMUSP00000044333
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-D6RDE5
Rfx5-007OTTMUST00000047067346No protein-
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
--
Rfx5-002OTTMUST000000470624139No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
--
Rfx5-008OTTMUST00000047068680No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
--
Statistics

Exons: 11 Transcript length: 2,355 bps Translation length: 658 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS17598

Class

Known protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 2, last modified on 05/11/2013 (Created on 12/02/2007)

Alternative symbols

AC087062.4-009

Other assemblies

This transcript maps to 94,954,075-94,959,496 in GRCm38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts
Ensembl transcript having exact match with Havana:
Curation Method

Manual annotation from Havana

Transcript-based displays