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Description

regulatory factor X, 5 (influences HLA class II expression)

Location
Gene

This transcript is a product of gene OTTMUSG00000019670

This gene has 16 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDbpProteinBiotypeCCDSUniProtFlags
Rfx5-017OTTMUST000000826514333658 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS17598Q9JL61
Rfx5-009OTTMUST000000556752355658 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS17598Q9JL61
Rfx5-010OTTMUST000000556762350658 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS17598Q9JL61
Rfx5-004OTTMUST000000470644450303 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q6DI69
Rfx5-016OTTMUST000000556824367303 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q6DI69
Rfx5-012OTTMUST00000055678882182 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D3Z0D4 CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
Rfx5-014OTTMUST00000055680565105 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D3YZK7 CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
Rfx5-015OTTMUST0000005568153891 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D3YTK4 CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
Rfx5-013OTTMUST0000005567953695 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D3YVW1 CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
Rfx5-005OTTMUST00000047065486131 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-K4DI79 CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
Rfx5-001OTTMUST00000047061401441 aa
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-D6RDE5
Rfx5-006OTTMUST0000004706670541 aa
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-D6RDE5
Rfx5-018OTTMUST0000008265252541 aa
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-D6RDE5
Rfx5-007OTTMUST00000047067346No protein
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
--
Rfx5-002OTTMUST000000470624139No protein
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
--
Rfx5-008OTTMUST00000047068680No protein
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
--
Statistics

Exons: 11 Transcript length: 2,355 bps Translation length: 658 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS17598

Class

Known protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 2, last modified on 05/11/2013 (Created on 12/02/2007)

Alternative symbols

AC087062.4-009

Other assemblies

This transcript maps to 94,954,075-94,959,496 in GRCm38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts
Ensembl transcript having exact match with Havana:
Curation Method

Manual annotation from Havana

Transcript-based displays