MouseVega Home

Updated annotation available

There is updated annotation for this transcript available here.

Description

protocadherin 15

Location
Gene

This transcript is a product of gene OTTMUSG00000021142

This gene has 33 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDLength (bp)Protein IDLength (aa)BiotypeCDS incompleteCCDS
Pcdh15-001OTTMUST000000500626947OTTMUSP000000233131943Protein codingGenes and/or transcript that contains an open reading frame (ORF).-CCDS35934
Pcdh15-007OTTMUST000001041996932OTTMUSP000000582891938Protein codingGenes and/or transcript that contains an open reading frame (ORF).-CCDS56715
Pcdh15-009OTTMUST000000500646926OTTMUSP000000233141936Protein codingGenes and/or transcript that contains an open reading frame (ORF).-CCDS56718
Pcdh15-031OTTMUST000001042006917OTTMUSP000000582901933Protein codingGenes and/or transcript that contains an open reading frame (ORF).-CCDS48594
Pcdh15-028OTTMUST000001041876866OTTMUSP000000582811916Protein codingGenes and/or transcript that contains an open reading frame (ORF).-CCDS56720
Pcdh15-006OTTMUST000000500616857OTTMUSP000000233121913Protein codingGenes and/or transcript that contains an open reading frame (ORF).-CCDS56721
Pcdh15-029OTTMUST000001041986806OTTMUSP000000582881896Protein codingGenes and/or transcript that contains an open reading frame (ORF).-CCDS48595
Pcdh15-016OTTMUST000001042026719OTTMUSP000000582921867Protein codingGenes and/or transcript that contains an open reading frame (ORF).-CCDS56719
Pcdh15-030OTTMUST000000500556322OTTMUSP000000233071518Protein codingGenes and/or transcript that contains an open reading frame (ORF).-CCDS56716
Pcdh15-004OTTMUST000000500596287OTTMUSP000000233111790Protein codingGenes and/or transcript that contains an open reading frame (ORF).-CCDS56711
Pcdh15-010OTTMUST000001042085696OTTMUSP000000582951682Protein codingGenes and/or transcript that contains an open reading frame (ORF).-CCDS56713
Pcdh15-002OTTMUST000000500575681OTTMUSP000000233091677Protein codingGenes and/or transcript that contains an open reading frame (ORF).-CCDS56717
Pcdh15-019OTTMUST000001041854879OTTMUSP000000582801176Protein codingGenes and/or transcript that contains an open reading frame (ORF).-CCDS56712
Pcdh15-027OTTMUST000001041884863OTTMUSP000000582821171Protein codingGenes and/or transcript that contains an open reading frame (ORF).-CCDS56714
Pcdh15-021OTTMUST000000500755336OTTMUSP000000384771129Protein codingGenes and/or transcript that contains an open reading frame (ORF).--
Pcdh15-014OTTMUST000000500563860OTTMUSP00000023308981Protein codingGenes and/or transcript that contains an open reading frame (ORF).--
Pcdh15-017OTTMUST000001041843300OTTMUSP00000058279650Protein codingGenes and/or transcript that contains an open reading frame (ORF).--
Pcdh15-013OTTMUST000000500683074OTTMUSP00000023317719Protein codingGenes and/or transcript that contains an open reading frame (ORF).--
Pcdh15-012OTTMUST000000500672867OTTMUSP00000023316650Protein codingGenes and/or transcript that contains an open reading frame (ORF).--
Pcdh15-011OTTMUST000000500662754OTTMUSP00000058297334Protein codingGenes and/or transcript that contains an open reading frame (ORF).--
Pcdh15-005OTTMUST000000500601891OTTMUSP00000058296415Protein codingGenes and/or transcript that contains an open reading frame (ORF).--
Pcdh15-033OTTMUST00000104220472OTTMUSP0000005830416Protein codingGenes and/or transcript that contains an open reading frame (ORF).3'-
Pcdh15-008OTTMUST000000500635207No protein product-ArtifactError in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the VEGA/Havana project.--
Pcdh15-015OTTMUST000001042036852OTTMUSP00000058293684Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. --
Pcdh15-032OTTMUST000001042016846OTTMUSP00000058291684Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. --
Pcdh15-003OTTMUST000000500583315OTTMUSP00000023310326Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. --
Pcdh15-025OTTMUST000000501613404No protein product-Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.--
Pcdh15-018OTTMUST000000500722841No protein product-Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.--
Pcdh15-023OTTMUST000000501592712No protein product-Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.--
Pcdh15-022OTTMUST000000501582436No protein product-Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.--
Pcdh15-024OTTMUST000000501601024No protein product-Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.--
Pcdh15-020OTTMUST00000050074691No protein product-Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.--
Pcdh15-026OTTMUST00000050162460No protein product-Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.--
Statistics

Exons: 35 Transcript length: 6,947 bps Translation length: 1,943 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS35934

Class

Known protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 2, last modified on 10/03/2012 (Created on 19/10/2006)

Alternative symbols

RP23-139H21.1-001

Remarks

NP_075604

CCDS35934.1

Other assemblies

This transcript maps to 73,821,883-74,632,664 in GRCm38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts
Ensembl transcript having exact match with Havana:
Curation Method

Transcript-based displays