MouseVega Home

Updated annotation available

There is updated annotation for this transcript available here.

Description

procollagen type XI alpha 1

Gene

This transcript is a product of gene OTTMUSG00000022509

This gene has 4 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDLengthProteinBiotypeCCDSUniProtFlags
Col11a1-001OTTMUST000000538887667 bp1804 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS17778Q61245
Col11a1-004OTTMUST000000538942064 bp568 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E9PVT8 CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
Col11a1-003OTTMUST000000538932570 bp536 aa (view)
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-V9GWX8 CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.
Col11a1-002OTTMUST000000538892112 bp No protein product
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
--
Statistics

Exons: 67 Transcript length: 7,667 bps Translation length: 1,804 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS17778

Class

Known protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 3, last modified on 05/02/2013 (Created on 19/01/2007)

Alternative symbols

AC156386.1-001

Remarks

NP_031755

Other assemblies

This transcript maps to 114,030,540-114,220,718 in GRCm38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts
Ensembl transcript having exact match with Havana:
Curation Method

Transcript-based displays