Transcript: Stx2-001 OTTMUST00000068560.1

Description

syntaxin 2

Location

Chromosome 5: 128,984,557-129,008,574 reverse strand.

About this transcript

This transcript has 11 exons and is annotated with 16 domains and features.

Gene

This transcript is a product of gene OTTMUSG00000027708 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
Stx2-001	OTTMUST00000068560.1	2939	289aa	OTTMUSP00000034696	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS19692	Q80W45
Stx2-002	OTTMUST00000068561.1	2769	288aa	OTTMUSP00000034697	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS71672	Q3TJ55
Stx2-006	OTTMUST00000068565.2	361	85aa	OTTMUSP00000034698	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	D3YY94	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
Stx2-009	OTTMUST00000136851.1	374	42aa	OTTMUSP00000072164	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	-
Stx2-004	OTTMUST00000068563.1	711	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
Stx2-003	OTTMUST00000068562.1	1127	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
Stx2-007	OTTMUST00000068566.1	758	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
Stx2-005	OTTMUST00000068564.1	719	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
Stx2-008	OTTMUST00000136852.1	653	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 11 Transcript length: 2,939 bps Translation length: 289 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS19692

Class

Known protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 1, last modified on 02/12/2014 (Created on 15/08/2007)

Alternative symbols

AC110566.2-001

Remarks

NP_031967

Other assemblies

This transcript maps to 128,984,557-129,008,574 in GRCm38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENSMUST00000031378

Curation Method

Manual annotation from Havana

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Recent locations

Transcript: Stx2-001 OTTMUST00000068560.1

Summary

Transcript-based displays