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Updated annotation available

There is updated annotation for this transcript available here.

Description

survival motor neuron 1

About this transcript

This transcript has 9 exons and is annotated with 7 domains and features.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtFlags
Smn1-001OTTMUST000000842391222288aaOTTMUSP00000045374
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS26725P97801
Smn1-008OTTMUST00000084246485162aaOTTMUSP00000045377
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-B8JJX7 CDS 5' and 3' incomplete5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.
Smn1-003OTTMUST0000008424122339aaOTTMUSP00000045375
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q5PXT4
Smn1-004OTTMUST00000084242378No protein-
 
ArtifactError in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the VEGA/Havana project.
--
Smn1-006OTTMUST0000008424442146aaOTTMUSP00000045376
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-D6RI18
Smn1-005OTTMUST00000084243639No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
--
Smn1-007OTTMUST00000084245600No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
--
Smn1-009OTTMUST00000084247547No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
--
Smn1-002OTTMUST00000084240453No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
--
Smn1-010OTTMUST00000084248417No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
--
Statistics

Exons: 9 Transcript length: 1,222 bps Translation length: 288 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS26725

Class

Known protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 1, last modified on 25/07/2012 (Created on 04/09/2008)

Alternative symbols

RP23-333E24.4-001

Other assemblies

This transcript maps to 100,124,852-100,137,690 in GRCm38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts
Ensembl transcript having exact match with Havana:
Curation Method

Manual annotation from Havana

Transcript-based displays