Transcript: Sema6a-004 OTTMUST00000085731.1

Description

sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A

Location

Chromosome 18: 47,247,440-47,368,448 reverse strand.

About this transcript

This transcript has 20 exons and is annotated with 16 domains and features.

Gene

This transcript is a product of gene OTTMUSG00000033972 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
Sema6a-001	OTTMUST00000085728.1	6856	1031aa	OTTMUSP00000046340	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS37813	O35464
Sema6a-003	OTTMUST00000085730.1	4123	976aa	OTTMUSP00000046341	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS79642	-
Sema6a-007	OTTMUST00000085734.2	3291	1031aa	OTTMUSP00000046343	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS37813	O35464
Sema6a-004	OTTMUST00000085731.1	4339	1048aa	OTTMUSP00000046342	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	D3YWM8
Sema6a-008	OTTMUST00000085735.2	740	216aa	OTTMUSP00000046344	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
Sema6a-010	OTTMUST00000085737.1	652	111aa	OTTMUSP00000046345	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
Sema6a-002	OTTMUST00000085729.1	3018	No protein	-	<p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact	-	-
Sema6a-006	OTTMUST00000085733.1	3328	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
Sema6a-005	OTTMUST00000085732.1	3225	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
Sema6a-009	OTTMUST00000085736.1	717	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 20 Transcript length: 4,339 bps Translation length: 1,048 residues

Class

Novel protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 1, last modified on 02/10/2013 (Created on 08/12/2008)

Alternative symbols

AC124466.1-004

Other assemblies

This transcript maps to 47,247,440-47,368,448 in GRCm38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENSMUST00000135790

Curation Method

Manual annotation from Havana

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Recent locations

Transcript: Sema6a-004 OTTMUST00000085731.1

Summary

Transcript-based displays