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Updated annotation available

There is updated annotation for this transcript available here.

Description

very low density lipoprotein receptor

Location
About this transcript

This transcript has 19 exons and is annotated with 71 domains and features.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtFlags
Vldlr-001OTTMUST000000922607971873aaOTTMUSP00000050945
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS29721P98156
Vldlr-002OTTMUST000000922673855845aaOTTMUSP00000050950
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS50411Q91YY0
Vldlr-006OTTMUST000000922753260804aaOTTMUSP00000050956
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-F8WGI9
Vldlr-009OTTMUST00000092295774258aaOTTMUSP00000050969
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-F6RKS4 CDS 5' and 3' incomplete5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.
Vldlr-007OTTMUST0000009229245489aaOTTMUSP00000050966
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E9Q643 CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
Vldlr-004OTTMUST000000922722356No protein-
 
ArtifactError in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the VEGA/Havana project.
--
Vldlr-005OTTMUST000000922743253498aaOTTMUSP00000050955
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-F8WIN7
Vldlr-008OTTMUST00000092293511No protein-
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
--
Vldlr-003OTTMUST000000922714895No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
--
Statistics

Exons: 19 Transcript length: 7,971 bps Translation length: 873 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS29721

Class

Known protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 4, last modified on 10/03/2012 (Created on 11/05/2010)

Alternative symbols

RP24-498L9.1-001

Remarks

NP_038731.2

Other assemblies

This transcript maps to 27,217,357-27,254,231 in GRCm38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts
Ensembl transcript having exact match with Havana:
Curation Method

Manual annotation from Havana

Transcript-based displays