Transcript: Cpsf6-001 OTTMUST00000110120.1

Description

cleavage and polyadenylation specific factor 6

Location

Chromosome 10: 117,344,673-117,376,970 reverse strand.

About this transcript

This transcript has 10 exons and is annotated with 11 domains and features.

Gene

This transcript is a product of gene OTTMUSG00000042016 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
Cpsf6-001	OTTMUST00000110120.1	6526	551aa	OTTMUSP00000061367	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS24193	Q6NVF9
Cpsf6-003	OTTMUST00000110124.1	3819	551aa	OTTMUSP00000061371	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS24193	Q6NVF9
Cpsf6-002	OTTMUST00000110121.1	2200	552aa	OTTMUSP00000061368	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS78898	H3BJ30
Cpsf6-005	OTTMUST00000110122.1	2227	588aa	OTTMUSP00000061369	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	H3BJW3
Cpsf6-007	OTTMUST00000110125.1	449	39aa	OTTMUSP00000061372	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
Cpsf6-008	OTTMUST00000110127.2	377	91aa	OTTMUSP00000061373	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
Cpsf6-006	OTTMUST00000110123.1	717	182aa	OTTMUSP00000061370	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
Cpsf6-004	OTTMUST00000110126.1	2749	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 10 Transcript length: 6,526 bps Translation length: 551 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS24193

Class

Known protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 1, last modified on 11/08/2016 (Created on 12/07/2011)

Alternative symbols

RP23-326O5.1-001

Remarks

5930406E08Rik

C530046F18Rik

CCDS24193.1

I920050N22Rik

Other assemblies

This transcript maps to 117,344,673-117,376,970 in GRCm38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENSMUST00000069168

Curation Method

Manual annotation from Havana

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Recent locations

Transcript: Cpsf6-001 OTTMUST00000110120.1

Summary

Transcript-based displays