Transcript: Smg6-001 OTTMUST00000013971.2

Description

Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)

Location

About this transcript

This transcript has 19 exons and is annotated with 26 domains and features.

Gene

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
Smg6-001	OTTMUST00000013971.2	5848	1418aa	OTTMUSP00000006490	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS25039	P61406
Smg6-004	OTTMUST00000013974.7	714	238aa	OTTMUSP00000006491	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete
Smg6-003	OTTMUST00000013973.2	4078	356aa	OTTMUSP00000038052	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
Smg6-006	OTTMUST00000013976.1	637	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
Smg6-005	OTTMUST00000013975.1	487	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
Smg6-002	OTTMUST00000013972.1	2200	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 19 Transcript length: 5,848 bps Translation length: 1,418 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS25039

Class

protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 2, last modified on 01/10/2013 (Created on 23/01/2004)

Alternative symbols

RP23-143A14.6-001

Other assemblies

This transcript maps to 74,925,823-75,164,448 in GRCm38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENSMUST00000045281

Curation Method

Manual annotation from Havana