Transcript: Kdm1a-002 OTTMUST00000022415.1

Description

lysine (K)-specific demethylase 1A

Location

Chromosome 4: 136,550,544-136,602,687 reverse strand.

About this transcript

This transcript has 20 exons and is annotated with 28 domains and features.

Gene

This transcript is a product of gene OTTMUSG00000009707 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
Kdm1a-001	OTTMUST00000022414.2	3008	853aa	OTTMUSP00000010217	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS51331	Q6ZQ88
Kdm1a-002	OTTMUST00000022415.1	3028	873aa	OTTMUSP00000010218	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	A3KG93
Kdm1a-007	OTTMUST00000090078.2	2051	683aa	OTTMUSP00000049341	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	G8JL40	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
Kdm1a-009	OTTMUST00000090080.2	965	322aa	OTTMUSP00000049342	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	F6Z4I3	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete
Kdm1a-003	OTTMUST00000022416.2	751	250aa	OTTMUSP00000010219	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	F6ZC60	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete
Kdm1a-005	OTTMUST00000022418.4	1130	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
Kdm1a-004	OTTMUST00000022417.2	995	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
Kdm1a-006	OTTMUST00000022419.1	858	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
Kdm1a-008	OTTMUST00000090079.1	828	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 20 Transcript length: 3,028 bps Translation length: 873 residues

Class

Novel protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 1, last modified on 10/03/2012 (Created on 29/03/2005)

Alternative symbols

RP23-426N4.2-002

Remarks

Y0G0148K16Rik

Other assemblies

This transcript maps to 136,550,544-136,602,687 in GRCm38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENSMUST00000105847

Curation Method

Manual annotation from Havana

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Recent locations

Transcript: Kdm1a-002 OTTMUST00000022415.1

Summary

Transcript-based displays