Transcript: Spag4-001 OTTMUST00000038350.2

Description

sperm associated antigen 4

Location

Chromosome 2: 156,065,244-156,069,501 forward strand.

About this transcript

This transcript has 12 exons and is annotated with 10 domains and features.

Gene

This transcript is a product of gene OTTMUSG00000016063 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
Spag4-001	OTTMUST00000038350.2	1473	443aa	OTTMUSP00000017189	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS50777	Q9JJF2
Spag4-005	OTTMUST00000038361.3	747	210aa	OTTMUSP00000029696	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	B7ZCP3	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
Spag4-007	OTTMUST00000084166.1	438	78aa	OTTMUSP00000045323	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
Spag4-008	OTTMUST00000084167.1	370	40aa	OTTMUSP00000045324	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
Spag4-006	OTTMUST00000060785.1	667	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
Spag4-003	OTTMUST00000038359.1	3892	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
Spag4-004	OTTMUST00000038360.1	2203	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
Spag4-002	OTTMUST00000038358.1	2022	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 12 Transcript length: 1,473 bps Translation length: 443 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS50777

Class

Known protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 2, last modified on 10/03/2012 (Created on 10/03/2006)

Alternative symbols

RP23-220D12.5-001

Other assemblies

This transcript maps to 156,065,244-156,069,501 in GRCm38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENSMUST00000038860

Curation Method

Manual annotation from Havana

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Recent locations

Transcript: Spag4-001 OTTMUST00000038350.2

Summary

Transcript-based displays