Transcript: Vps33b-001 OTTMUST00000042739.2

Description

vacuolar protein sorting 33B (yeast)

Location

Chromosome 7: 80,269,649-80,291,579 forward strand.

About this transcript

This transcript has 23 exons and is annotated with 10 domains and features.

Gene

This transcript is a product of gene OTTMUSG00000017577 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
Vps33b-001	OTTMUST00000042739.2	2574	617aa	OTTMUSP00000019195	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS39997	P59016
Vps33b-007	OTTMUST00000144015.1	397	104aa	OTTMUSP00000075087	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	A0A0U1RPK8	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
Vps33b-002	OTTMUST00000042751.2	2554	143aa	OTTMUSP00000065175	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	S4R1H4
Vps33b-003	OTTMUST00000042752.2	2413	80aa	OTTMUSP00000065176	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	S4R227
Vps33b-004	OTTMUST00000042765.1	420	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
Vps33b-005	OTTMUST00000042766.2	1690	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
Vps33b-006	OTTMUST00000042767.1	639	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 23 Transcript length: 2,574 bps Translation length: 617 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS39997

Class

Known protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 2, last modified on 20/07/2015 (Created on 21/06/2006)

Alternative symbols

AC109232.1-001

Other assemblies

This transcript maps to 80,269,649-80,291,579 in GRCm38 (Ensembl) coordinates.

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Alternative transcripts

Ensembl transcript having exact match with Havana:	ENSMUST00000032749

Curation Method

Manual annotation from Havana

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Recent locations

Transcript: Vps33b-001 OTTMUST00000042739.2

Summary

Transcript-based displays