Transcript: Pcdh19-001 OTTMUST00000044950.2

Description

protocadherin 19

Location

About this transcript

This transcript has 6 exons and is annotated with 50 domains and features.

Gene

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
Pcdh19-001	OTTMUST00000044950.2	10289	1145aa	OTTMUSP00000020199	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS41117	Q80TF3
Pcdh19-004	OTTMUST00000129109.1	8407	1097aa	OTTMUSP00000069395	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS53181	E9Q5E1
Pcdh19-002	OTTMUST00000044951.2	7035	641aa	OTTMUSP00000020200	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	A2AGW4	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
Pcdh19-003	OTTMUST00000129111.1	3319	No protein	-	<p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact	-	-
Pcdh19-006	OTTMUST00000129110.1	335	7aa	OTTMUSP00000069396	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
Pcdh19-005	OTTMUST00000129112.1	405	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-

Summary

Statistics

Exons: 6 Transcript length: 10,289 bps Translation length: 1,145 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS41117

Class

Known protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 2, last modified on 03/06/2014 (Created on 19/07/2006)

Alternative symbols

RP23-330I16.1-001

Remarks

NP_001098715.1

Other assemblies

This transcript maps to 133,582,860-133,688,987 in GRCm38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENSMUST00000149154

Curation Method

Manual annotation from Havana