Transcript: Sema3a-001 OTTMUST00000050494.1

Description

sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A

Location

Chromosome 5: 13,399,309-13,602,565 forward strand.

About this transcript

This transcript has 17 exons and is annotated with 15 domains and features.

Gene

This transcript is a product of gene OTTMUSG00000021298 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
Sema3a-001	OTTMUST00000050494.1	5930	772aa	OTTMUSP00000023579	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS19092	O08665
Sema3a-002	OTTMUST00000050495.1	4085	772aa	OTTMUSP00000023580	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS19092	O08665
Sema3a-003	OTTMUST00000050496.3	2285	688aa	OTTMUSP00000052138	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
Sema3a-004	OTTMUST00000050497.2	400	72aa	OTTMUSP00000023581	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
Sema3a-005	OTTMUST00000050498.2	312	62aa	OTTMUSP00000023582	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
Sema3a-009	OTTMUST00000135547.1	2593	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
Sema3a-007	OTTMUST00000135544.1	1954	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
Sema3a-006	OTTMUST00000135546.1	2624	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
Sema3a-008	OTTMUST00000135545.1	2593	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 17 Transcript length: 5,930 bps Translation length: 772 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS19092

Class

Known protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 1, last modified on 10/03/2012 (Created on 30/10/2006)

Alternative symbols

AC022368.1-001

Other assemblies

This transcript maps to 13,399,309-13,602,565 in GRCm38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENSMUST00000030714

Curation Method

Manual annotation from Havana

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Recent locations

Transcript: Sema3a-001 OTTMUST00000050494.1

Summary

Transcript-based displays