Transcript: Sccpdh-001 OTTMUST00000052000.1

Description

saccharopine dehydrogenase (putative)

Location

Chromosome 1: 179,668,210-179,687,189 forward strand.

About this transcript

This transcript has 12 exons and is annotated with 7 domains and features.

Gene

This transcript is a product of gene OTTMUSG00000021897 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
Sccpdh-001	OTTMUST00000052000.1	1948	429aa	OTTMUSP00000024557	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS15563	Q8R127
Sccpdh-006	OTTMUST00000052005.1	660	170aa	OTTMUSP00000024560	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	F6S0R8	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
Sccpdh-005	OTTMUST00000052004.1	527	120aa	OTTMUSP00000024559	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	F6SP57	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
Sccpdh-003	OTTMUST00000052002.2	1630	No protein	-	<p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact	-	-
Sccpdh-004	OTTMUST00000052003.2	1818	130aa	OTTMUSP00000062744	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	J3QNN5
Sccpdh-002	OTTMUST00000052001.1	3561	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
Sccpdh-007	OTTMUST00000127932.1	2989	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 12 Transcript length: 1,948 bps Translation length: 429 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS15563

Class

Known protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 1, last modified on 10/03/2012 (Created on 12/12/2006)

Alternative symbols

AC113977.1-001

Remarks

NP_848768

Other assemblies

This transcript maps to 179,668,210-179,687,189 in GRCm38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENSMUST00000040538

Curation Method

Manual annotation from Havana

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Recent locations

Transcript: Sccpdh-001 OTTMUST00000052000.1

Summary

Transcript-based displays