Transcript: Col25a1-002 OTTMUST00000054365.2

Description

procollagen type XXV alpha 1

Location

About this transcript

This transcript has 38 exons and is annotated with 22 domains and features.

Gene

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt
Col25a1-001	OTTMUST00000054364.1	6701	640aa	OTTMUSP00000025947	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS38636	E9Q5L6
Col25a1-002	OTTMUST00000054365.2	2624	666aa	OTTMUSP00000025948	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS38637	Q99MQ5
Col25a1-004	OTTMUST00000054367.2	3778	593aa	OTTMUSP00000065372	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	V9GWX5
Col25a1-005	OTTMUST00000135662.1	1078	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
Col25a1-003	OTTMUST00000054366.2	3514	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
Col25a1-006	OTTMUST00000135679.1	2723	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 38 Transcript length: 2,624 bps Translation length: 666 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS38637

Class

Known protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 2, last modified on 28/10/2014 (Created on 29/01/2007)

Alternative symbols

AC110540.1-002

Remarks

NP_084114

Other assemblies

This transcript maps to 130,180,891-130,595,132 in GRCm38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENSMUST00000080335

Curation Method

Manual annotation from Havana