Transcript: Sh3tc1-001 OTTMUST00000061223.1

Description

SH3 domain and tetratricopeptide repeats 1

Location

Chromosome 5: 35,697,180-35,729,276 reverse strand.

About this transcript

This transcript has 18 exons and is annotated with 29 domains and features.

Gene

This transcript is a product of gene OTTMUSG00000024850 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
Sh3tc1-001	OTTMUST00000061223.1	4549	1346aa	OTTMUSP00000029983	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS19234	G3X9F6
Sh3tc1-007	OTTMUST00000138594.1	4246	1346aa	OTTMUSP00000072842	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS19234	G3X9F6
Sh3tc1-003	OTTMUST00000061225.1	3875	1147aa	OTTMUSP00000029985	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	F6U4F1	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
Sh3tc1-002	OTTMUST00000061224.1	3892	47aa	OTTMUSP00000029984	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	F6UWL1	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
Sh3tc1-005	OTTMUST00000061227.1	3411	130aa	OTTMUSP00000029986	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	F6QD49	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
Sh3tc1-006	OTTMUST00000061228.1	370	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
Sh3tc1-004	OTTMUST00000061226.1	4991	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 18 Transcript length: 4,549 bps Translation length: 1,346 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS19234

Class

Known protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 1, last modified on 05/02/2015 (Created on 25/04/2007)

Alternative symbols

AC122871.3-001

Other assemblies

This transcript maps to 35,697,180-35,729,276 in GRCm38 (Ensembl) coordinates.

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Alternative transcripts

Ensembl transcript having exact match with Havana:	ENSMUST00000070203

Curation Method

Manual annotation from Havana

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Recent locations

Transcript: Sh3tc1-001 OTTMUST00000061223.1

Summary

Transcript-based displays