Transcript: Nfxl1-001 OTTMUST00000064315.1

Description

nuclear transcription factor, X-box binding-like 1

Location

Chromosome 5: 72,513,301-72,559,684 reverse strand.

About this transcript

This transcript has 23 exons and is annotated with 37 domains and features.

Gene

This transcript is a product of gene OTTMUSG00000026056 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
Nfxl1-001	OTTMUST00000064315.1	3712	918aa	OTTMUSP00000031920	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS39109	E9Q8I7
Nfxl1-004	OTTMUST00000064326.2	1373	346aa	OTTMUSP00000031928	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	E9Q3K1	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
Nfxl1-002	OTTMUST00000064324.1	3579	500aa	OTTMUSP00000031927	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	E9PZN0
Nfxl1-009	OTTMUST00000135454.1	4172	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
Nfxl1-006	OTTMUST00000064328.1	1193	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
Nfxl1-005	OTTMUST00000064327.1	884	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
Nfxl1-007	OTTMUST00000064329.1	800	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
Nfxl1-003	OTTMUST00000064325.1	798	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
Nfxl1-008	OTTMUST00000064330.1	416	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 23 Transcript length: 3,712 bps Translation length: 918 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS39109

Class

Novel protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 1, last modified on 10/03/2012 (Created on 20/06/2007)

Alternative symbols

AC161529.1-001

Other assemblies

This transcript maps to 72,513,301-72,559,684 in GRCm38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENSMUST00000087216

Curation Method

Manual annotation from Havana

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Recent locations

Transcript: Nfxl1-001 OTTMUST00000064315.1

Summary

Transcript-based displays