Transcript: Cops5-001 OTTMUST00000072996.2

Description

COP9 (constitutive photomorphogenic) homolog, subunit 5 (Arabidopsis thaliana)

Location

Chromosome 1: 10,024,601-10,038,127 reverse strand.

About this transcript

This transcript has 8 exons and is annotated with 8 domains and features.

Gene

This transcript is a product of gene OTTMUSG00000029459 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
Cops5-001	OTTMUST00000072996.2	1698	334aa	OTTMUSP00000037726	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS14818	O35864
Cops5-005	OTTMUST00000118983.2	771	210aa	OTTMUSP00000066330	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	A0A087WQA8	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
Cops5-006	OTTMUST00000118982.1	962	48aa	OTTMUSP00000066329	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	A0A087WRH6
Cops5-007	OTTMUST00000118981.1	877	147aa	OTTMUSP00000066328	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	A0A087WQ60	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
Cops5-003	OTTMUST00000072998.1	2204	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
Cops5-002	OTTMUST00000072997.2	898	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
Cops5-004	OTTMUST00000118984.1	666	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 8 Transcript length: 1,698 bps Translation length: 334 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS14818

Class

Known protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 2, last modified on 08/10/2013 (Created on 26/10/2007)

Alternative symbols

AC102570.5-001

Other assemblies

This transcript maps to 10,024,601-10,038,127 in GRCm38 (Ensembl) coordinates.

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Alternative transcripts

Ensembl transcript having exact match with Havana:	ENSMUST00000027050

Curation Method

Manual annotation from Havana

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Recent locations

Transcript: Cops5-001 OTTMUST00000072996.2

Summary

Transcript-based displays