Transcript: Hps1-002 OTTMUST00000080946.1

Description

Hermansky-Pudlak syndrome 1 homolog (human)

Location

Chromosome 19: 42,755,198-42,779,976 reverse strand.

About this transcript

This transcript has 20 exons and is annotated with 5 domains and features.

Gene

This transcript is a product of gene OTTMUSG00000032530 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
Hps1-001	OTTMUST00000080945.3	2847	704aa	OTTMUSP00000043177	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS37992	A0A0R4J062
Hps1-009	OTTMUST00000083393.1	2647	704aa	OTTMUSP00000044809	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS37992	A0A0R4J062
Hps1-003	OTTMUST00000080947.1	3196	635aa	OTTMUSP00000043179	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-
Hps1-002	OTTMUST00000080946.1	2952	712aa	OTTMUSP00000043178	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-
Hps1-005	OTTMUST00000080949.1	2608	627aa	OTTMUSP00000043181	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-
Hps1-006	OTTMUST00000080952.3	462	24aa	OTTMUSP00000044811	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
Hps1-004	OTTMUST00000080948.2	4189	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
Hps1-008	OTTMUST00000080954.1	692	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
Hps1-007	OTTMUST00000080953.1	389	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 20 Transcript length: 2,952 bps Translation length: 712 residues

Class

Novel protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 1, last modified on 02/10/2013 (Created on 08/04/2008)

Alternative symbols

AC125458.1-002

Remarks

F630115D10Rik

Other assemblies

This transcript maps to 42,755,198-42,779,976 in GRCm38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENSMUST00000160455

Curation Method

Manual annotation from Havana

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Recent locations

Transcript: Hps1-002 OTTMUST00000080946.1

Summary

Transcript-based displays