Description
histocompatibility 2, blastocyst
Location
Chromosome 17: 36,080,189-36,084,223 reverse strand.
About this transcript
This transcript has 5 exons and is annotated with 13 domains and features.
Gene
This transcript is a product of gene OTTMUSG00000037291 Show transcript tableHide transcript table
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt | Flags |
|---|---|---|---|---|---|---|---|---|
| H2-Bl-008 | OTTMUST00000096216.1 | 862 | 257aa | OTTMUSP00000053733 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | V9GXR0 | |
| H2-Bl-011 | OTTMUST00000096219.1 | 358 | 89aa | OTTMUSP00000053735 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | V9GXI3 | |
| H2-Bl-009 | OTTMUST00000096217.1 | 316 | 75aa | OTTMUSP00000053734 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | V9GWS8 | |
| H2-Bl-010 | OTTMUST00000096218.1 | 438 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
| H2-Bl-005 | OTTMUST00000096214.1 | 1064 | 114aa | OTTMUSP00000053731 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | |
| H2-Bl-002 | OTTMUST00000096211.2 | 836 | 57aa | OTTMUSP00000053728 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | |
| H2-Bl-001 | OTTMUST00000096210.2 | 1138 | 349aa | OTTMUSP00000053727 | <p>Pseudogene loci in one genome (e.g. the reference) but coding in other genomes (i.e. non-reference) due to short or large scale genomic variation in some individuals/haplotypes/strains in a given population/species. It can be known elsewhere as segregating pseudogenes or SPGs.</p>Polymorphic pseudogene | - | - | |
| H2-Bl-003 | OTTMUST00000096212.2 | 1105 | 338aa | OTTMUSP00000053729 | <p>Pseudogene loci in one genome (e.g. the reference) but coding in other genomes (i.e. non-reference) due to short or large scale genomic variation in some individuals/haplotypes/strains in a given population/species. It can be known elsewhere as segregating pseudogenes or SPGs.</p>Polymorphic pseudogene | - | - | |
| H2-Bl-012 | OTTMUST00000096208.4 | 995 | 331aa | OTTMUSP00000053726 | <p>Pseudogene loci in one genome (e.g. the reference) but coding in other genomes (i.e. non-reference) due to short or large scale genomic variation in some individuals/haplotypes/strains in a given population/species. It can be known elsewhere as segregating pseudogenes or SPGs.</p>Polymorphic pseudogene | - | - | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete |
| H2-Bl-004 | OTTMUST00000096213.2 | 862 | 257aa | OTTMUSP00000053730 | <p>Pseudogene loci in one genome (e.g. the reference) but coding in other genomes (i.e. non-reference) due to short or large scale genomic variation in some individuals/haplotypes/strains in a given population/species. It can be known elsewhere as segregating pseudogenes or SPGs.</p>Polymorphic pseudogene | - | - | |
| H2-Bl-007 | OTTMUST00000096215.2 | 829 | 246aa | OTTMUSP00000053732 | <p>Pseudogene loci in one genome (e.g. the reference) but coding in other genomes (i.e. non-reference) due to short or large scale genomic variation in some individuals/haplotypes/strains in a given population/species. It can be known elsewhere as segregating pseudogenes or SPGs.</p>Polymorphic pseudogene | - | - | |
| H2-Bl-006 | OTTMUST00000096209.1 | 1072 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - |
