Transcript: Smg1-001 OTTMUST00000111843.1

Description

SMG1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans)

Location

Chromosome 7: 118,131,308-118,243,637 reverse strand.

About this transcript

This transcript has 63 exons and is annotated with 49 domains and features.

Gene

This transcript is a product of gene OTTMUSG00000042422 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
Smg1-001	OTTMUST00000111843.1	15557	3658aa	OTTMUSP00000062695	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS40102	Q8BKX6
Smg1-002	OTTMUST00000111846.3	1516	335aa	OTTMUSP00000062697	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
Smg1-006	OTTMUST00000111848.1	785	96aa	OTTMUSP00000062698	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
Smg1-005	OTTMUST00000111844.2	12147	59aa	OTTMUSP00000062696	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
Smg1-010	OTTMUST00000144699.1	447	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
Smg1-004	OTTMUST00000111847.1	3911	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
Smg1-003	OTTMUST00000111845.1	3630	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
Smg1-007	OTTMUST00000144702.1	2287	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
Smg1-008	OTTMUST00000144701.1	1534	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
Smg1-009	OTTMUST00000144700.1	1460	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 63 Transcript length: 15,557 bps Translation length: 3,658 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS40102

Class

Known protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 1, last modified on 06/08/2015 (Created on 15/02/2012)

Alternative symbols

RP24-440E10.1-001

Other assemblies

This transcript maps to 118,131,308-118,243,637 in GRCm38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENSMUST00000032891

Curation Method

Manual annotation from Havana

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Recent locations

Transcript: Smg1-001 OTTMUST00000111843.1

Summary

Transcript-based displays