Transcript: Trerf1-001 OTTMUST00000120484.2

Description

transcriptional regulating factor 1

Location

About this transcript

This transcript has 19 exons.

Gene

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS
Trerf1-001	OTTMUST00000120484.2	7045	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-
Trerf1-002	OTTMUST00000123103.1	4276	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-
Trerf1-005	OTTMUST00000123100.1	3503	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-
Trerf1-004	OTTMUST00000123102.1	3280	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-
Trerf1-003	OTTMUST00000123101.1	3255	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-

Summary

Statistics

Exons: 19 Transcript length: 7,045 bps

Class

processed transcript [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 2, last modified on 27/01/2014 (Created on 03/12/2013)

Alternative symbols

RP23-332P1.5-001

Remarks

1bp deletion (c) in penultimate exon causes a frameshift resulting in a premature stop codon in the final exon and truncating the protein

All mRNA's appear to have this deletion in comparison to the reference genome suggesting this is a genomic sequence error

NAGNAG splice site

sequence error

Ticket MG-209 submitted for this region, PCRs to be attempted

Other assemblies

This transcript maps to 47,140,942-47,361,958 in GRCm38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENSMUST00000190080

Curation Method

Manual annotation from Havana