Transcript: Xrn1-001 OTTMUST00000122294.3

Description

5'-3' exoribonuclease 1

Location

Chromosome 9: 95,954,767-96,057,803 forward strand.

About this transcript

This transcript has 42 exons and is annotated with 17 domains and features.

Gene

This transcript is a product of gene OTTMUSG00000047300 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
Xrn1-001	OTTMUST00000122294.3	10256	1719aa	OTTMUSP00000067137	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS81053	A0A087WQN7
Xrn1-003	OTTMUST00000122297.1	3093	969aa	OTTMUSP00000067138	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	A0A087WNV6
Xrn1-009	OTTMUST00000123612.3	357	40aa	OTTMUSP00000067474	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	A0A087WQ18	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
Xrn1-002	OTTMUST00000122296.1	6235	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
Xrn1-007	OTTMUST00000123430.1	3615	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
Xrn1-005	OTTMUST00000122295.1	3357	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
Xrn1-006	OTTMUST00000123431.1	3046	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
Xrn1-008	OTTMUST00000123613.1	844	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 42 Transcript length: 10,256 bps Translation length: 1,719 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS81053

Class

Known protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 3, last modified on 30/01/2014 (Created on 17/01/2014)

Alternative symbols

RP23-269E5.6-001

Other assemblies

This transcript maps to 95,954,767-96,057,803 in GRCm38 (Ensembl) coordinates.

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Alternative transcripts

Ensembl transcript having exact match with Havana:	ENSMUST00000185633

Curation Method

Manual annotation from Havana

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Recent locations

Transcript: Xrn1-001 OTTMUST00000122294.3

Summary

Transcript-based displays