Transcript: Ppfia4-001 OTTMUST00000126547.1

Description

protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4

Location

Chromosome 1: 134,296,783-134,332,928 reverse strand.

About this transcript

This transcript has 29 exons and is annotated with 34 domains and features.

Gene

This transcript is a product of gene OTTMUSG00000049678 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
Ppfia4-001	OTTMUST00000126547.1	6067	1187aa	OTTMUSP00000068415	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS48369	B8QI36
Ppfia4-003	OTTMUST00000126552.1	5238	1184aa	OTTMUSP00000068417	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	A0A087WPM2
Ppfia4-007	OTTMUST00000126548.1	4674	892aa	OTTMUSP00000068416	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	A0A087WPJ3	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
Ppfia4-002	OTTMUST00000126549.1	5418	No protein	-	<p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact	-	-
Ppfia4-004	OTTMUST00000126550.1	2955	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
Ppfia4-005	OTTMUST00000126551.1	2985	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
Ppfia4-006	OTTMUST00000126553.1	1215	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 29 Transcript length: 6,067 bps Translation length: 1,187 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS48369

Class

Known protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 1, last modified on 04/04/2014 (Created on 04/04/2014)

Alternative symbols

RP24-343C13.2-001

Remarks

Subject to NMD: NM_001144855.1 is barely if at all an NMD candidate (CDS ends 52 nts from last splice site). It is likely to escape NMD at least some of the time given the 50-55 nt threshold usually defined for NMD in the literature

Other assemblies

This transcript maps to 134,296,783-134,332,928 in GRCm38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENSMUST00000168515

Curation Method

Manual annotation from Havana

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Recent locations

Transcript: Ppfia4-001 OTTMUST00000126547.1

Summary

Transcript-based displays