PigVega Home

Pig

Sus scrofa

Annotation progress

Click on a chromosome to browse:

chromosome 1 chromosome 2 chromosome 3 chromosome 4 chromosome 5 chromosome 6 chromosome 7 chromosome 7-LW chromosome 8 chromosome 9 chromosome 10 chromosome 11 chromosome 12 chromosome 13 chromosome 14 chromosome 15 chromosome 16 chromosome 17 chromosome 18 chromosome X-WTSI chromosome Y-WTSI Karyotype selector

Shading indicates unannotated regions

This Release

Release Date 22nd Sept 2014
Datafreeze Date 5th Aug 2014
Havana Update Date 19 September 2014
As used in Ensembl 69 genebuild
Assembly Sscrofa10.2
Source Swine Genome Sequencing Consortium (SGSC)
Annotation Method Havana and Community Manual Annotation

Genome

Vega contains annotation on three other assemblies:
  • chromosome 7-LW is a small part of chromsome 7 containing the MHC region of the Large White breed.
  • chromosomes X-WTSI and Y-WTSI are alternative assemblies of the DUROC allosomes.

Community annotation

Vega pig contains manual annotation both from Havana and from the Immune Response Annotation Group (IRAG) community annotation initiative.

Havana Update

The Havana Update gene set presents updates to annotation outside of the regular release schedule.

Comparative Analysis

Region Available species / haplotypes / strains Examples
MHC dog, chimpanzee, gorilla, human (ref. plus 7 haplotypes), mouse (ref. plus 2 NOD strains), pig (Duroc & Large White), tasmanian devil, wallaby example
LRC pig, gorilla and human (ref. and 8 haplotypes). example