Click on a chromosome to browse:
Shading indicates unannotated regions
|Release Date||23 Feb 2015|
|Datafreeze Date||15 Dec 2014|
|Havana Update Date||9 June 2015|
|As used in||Ensembl 69 genebuild|
|Source||Swine Genome Sequencing Consortium (SGSC)|
|Annotation Method||Havana and Community Manual Annotation|
GenomeVega contains annotation on three other assemblies:
- chromosome 7-LW is a small part of chromsome 7 containing the MHC region of the Large White breed.
- chromosomes X-WTSI and Y-WTSI are alternative assemblies of the DUROC allosomes. Chromosome U_Y represents clones known to be part of the Y-WTSI assembly but which are currently unplaced.
Vega pig contains manual annotation both from Havana and from the Immune Response Annotation Group (IRAG) community annotation initiative.
|Region||Available species / haplotypes / strains||Examples|
|MHC||dog, chimpanzee, gorilla, human (ref. plus 7 haplotypes), mouse (ref. plus 2 NOD strains), pig (Duroc & Large White), tasmanian devil, wallaby||example|
|LRC||pig, gorilla and human (ref. and 8 haplotypes).||example|