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Summary
- Splice variants
- Transcript comparison
Sequence
Comparative Genomics
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- Orthologues
- Alt. alleles
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Gene: PTPN13 OTTHUMG00000160968

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Description

protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)

Synonyms

PTP-BL, PTPL1, PTP1E, PTP-BAS

Location

Chromosome 4: 86,594,315-86,815,157 forward strand.

VEGA68:CM000666.2

About this gene

This gene has 10 transcripts (splice variants), 24 orthologues and 22 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
PTPN13-001	OTTHUMT00000363189.1	8487	2466aa	OTTHUMP00000219449	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS47095	-
PTPN13-003	OTTHUMT00000363191.1	8119	2485aa	OTTHUMP00000219451	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS47094	Q12923
PTPN13-005	OTTHUMT00000363193.1	8076	2490aa	OTTHUMP00000219452	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS47093	-
PTPN13-002	OTTHUMT00000363190.1	7546	2294aa	OTTHUMP00000219450	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS47096	-
PTPN13-006	OTTHUMT00000363194.1	1708	227aa	OTTHUMP00000219453	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	D6R9M4
PTPN13-008	OTTHUMT00000363196.2	516	139aa	OTTHUMP00000219454	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	D6R9X4	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
PTPN13-004	OTTHUMT00000363192.1	8094	No protein	-	<p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact	-	-
PTPN13-007	OTTHUMT00000363195.1	193	No protein	-	<p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact	-	-
PTPN13-010	OTTHUMT00000363198.1	645	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
PTPN13-009	OTTHUMT00000363197.1	457	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

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Summary

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