Description
vacuolar protein sorting 53 homolog (S. cerevisiae)
Synonyms
FLJ10979, HCCS1
Location
Chromosome 17: 508,668-721,717 reverse strand.
VEGA68:CM000679.2
About this gene
This gene has 22 transcripts (splice variants).
Transcripts
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt | Flags |
|---|---|---|---|---|---|---|---|---|
| VPS53-001 | OTTHUMT00000436930.5 | 13106 | 832aa | OTTHUMP00000256667 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS45558 | - | |
| VPS53-002 | OTTHUMT00000436931.2 | 2656 | 670aa | OTTHUMP00000256668 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS10995 | - | |
| VPS53-006 | OTTHUMT00000436940.2 | 2356 | 699aa | OTTHUMP00000256674 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | Q5VIR6 | |
| VPS53-003 | OTTHUMT00000436932.2 | 1269 | 422aa | OTTHUMP00000256669 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | |
| VPS53-019 | OTTHUMT00000437045.1 | 729 | 237aa | OTTHUMP00000256719 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| VPS53-011 | OTTHUMT00000437006.2 | 613 | 68aa | OTTHUMP00000256702 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| VPS53-020 | OTTHUMT00000437095.1 | 585 | 145aa | OTTHUMP00000256748 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | |
| VPS53-008 | OTTHUMT00000437003.1 | 2641 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
| VPS53-007 | OTTHUMT00000436998.1 | 2477 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
| VPS53-005 | OTTHUMT00000436939.1 | 3204 | 216aa | OTTHUMP00000256673 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | |
| VPS53-004 | OTTHUMT00000436941.1 | 1903 | 547aa | OTTHUMP00000256675 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | |
| VPS53-009 | OTTHUMT00000437004.1 | 2444 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| VPS53-021 | OTTHUMT00000437097.1 | 744 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| VPS53-015 | OTTHUMT00000437016.1 | 575 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| VPS53-012 | OTTHUMT00000437007.1 | 570 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| VPS53-013 | OTTHUMT00000437015.1 | 561 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| VPS53-017 | OTTHUMT00000437018.1 | 494 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| VPS53-010 | OTTHUMT00000437005.1 | 2781 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| VPS53-022 | OTTHUMT00000437096.1 | 1972 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| VPS53-016 | OTTHUMT00000437014.1 | 732 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| VPS53-014 | OTTHUMT00000437017.1 | 683 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| VPS53-018 | OTTHUMT00000437035.1 | 366 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - |
