Description
class II, major histocompatibility complex, transactivator
Location
Chromosome 16: 10,877,198-10,932,281 forward strand.
About this transcript
This transcript has 20 exons and is annotated with 42 domains and features.
Gene
This transcript is a product of gene OTTHUMG00000129753 Show transcript tableHide transcript table
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt | Flags |
|---|---|---|---|---|---|---|---|---|
| CIITA-001 | OTTHUMT00000251966.4 | 11952 | 1130aa | OTTHUMP00000160172 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS10544 | A0A0B4J1S1 | |
| CIITA-002 | OTTHUMT00000436686.1 | 2344 | 546aa | OTTHUMP00000256539 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS66943 | - | |
| CIITA-013 | OTTHUMT00000489792.1 | 850 | 260aa | OTTHUMP00000282276 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| CIITA-008 | OTTHUMT00000436692.3 | 626 | 177aa | OTTHUMP00000256541 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | I3L2E5 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| CIITA-014 | OTTHUMT00000489793.1 | 498 | 139aa | OTTHUMP00000282277 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | A0A1B0GUQ8 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| CIITA-011 | OTTHUMT00000436688.1 | 6670 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
| CIITA-006 | OTTHUMT00000436690.2 | 1041 | 172aa | OTTHUMP00000256540 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | I3L2P7 | |
| CIITA-005 | OTTHUMT00000436691.1 | 1062 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| CIITA-012 | OTTHUMT00000436696.1 | 567 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| CIITA-009 | OTTHUMT00000436694.1 | 560 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| CIITA-003 | OTTHUMT00000436687.2 | 5342 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| CIITA-004 | OTTHUMT00000436689.1 | 3366 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| CIITA-010 | OTTHUMT00000436695.1 | 516 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| CIITA-007 | OTTHUMT00000436693.1 | 479 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - |
