Description
spastic paraplegia 7 (pure and complicated autosomal recessive)
Location
Chromosome 16: 89,508,411-89,537,721 forward strand.
About this transcript
This transcript has 10 exons and is annotated with 15 domains and features.
Gene
This transcript is a product of gene OTTHUMG00000138046 Show transcript tableHide transcript table
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt | Flags |
|---|---|---|---|---|---|---|---|---|
| SPG7-001 | OTTHUMT00000269921.2 | 3076 | 795aa | OTTHUMP00000175348 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS10977 | Q9UQ90 | |
| SPG7-002 | OTTHUMT00000269922.1 | 2288 | 489aa | OTTHUMP00000175349 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS10978 | - | |
| SPG7-012 | OTTHUMT00000430286.2 | 1361 | 109aa | OTTHUMP00000275017 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | A0A087X0F5 | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| SPG7-019 | OTTHUMT00000430292.2 | 756 | 154aa | OTTHUMP00000259314 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | J3KRF6 | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| SPG7-009 | OTTHUMT00000430281.2 | 581 | 131aa | OTTHUMP00000253801 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | H3BMP1 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| SPG7-008 | OTTHUMT00000429933.2 | 544 | 181aa | OTTHUMP00000253643 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete |
| SPG7-004 | OTTHUMT00000429935.1 | 2395 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
| SPG7-005 | OTTHUMT00000429936.1 | 2305 | 70aa | OTTHUMP00000253644 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | H3BNE4 | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| SPG7-018 | OTTHUMT00000430289.1 | 1025 | 210aa | OTTHUMP00000253803 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | H3BTY6 | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| SPG7-013 | OTTHUMT00000430288.1 | 734 | 106aa | OTTHUMP00000253802 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| SPG7-023 | OTTHUMT00000430333.2 | 1369 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| SPG7-021 | OTTHUMT00000430294.1 | 878 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| SPG7-007 | OTTHUMT00000429932.1 | 573 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| SPG7-022 | OTTHUMT00000430282.1 | 443 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| SPG7-006 | OTTHUMT00000429937.1 | 2042 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| SPG7-003 | OTTHUMT00000429934.1 | 1595 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| SPG7-020 | OTTHUMT00000430293.1 | 909 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| SPG7-011 | OTTHUMT00000430284.1 | 717 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| SPG7-014 | OTTHUMT00000430290.1 | 686 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| SPG7-016 | OTTHUMT00000430287.1 | 654 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| SPG7-017 | OTTHUMT00000430291.1 | 463 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| SPG7-010 | OTTHUMT00000430283.1 | 422 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| SPG7-015 | OTTHUMT00000430285.1 | 411 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - |
