Description
smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)
Location
Chromosome 17: 2,059,850-2,266,199 reverse strand.
About this transcript
This transcript has 12 exons and is annotated with 14 domains and features.
Gene
This transcript is a product of gene OTTHUMG00000177578 Show transcript tableHide transcript table
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt | Flags |
|---|---|---|---|---|---|---|---|---|
| SMG6-001 | OTTHUMT00000437826.3 | 5960 | 1419aa | OTTHUMP00000257106 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS11016 | Q86US8 | |
| SMG6-002 | OTTHUMT00000438057.1 | 3473 | 511aa | OTTHUMP00000257227 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS58498 | - | |
| SMG6-005 | OTTHUMT00000438059.2 | 1865 | 511aa | OTTHUMP00000257229 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS58498 | - | |
| SMG6-008 | OTTHUMT00000438477.3 | 689 | 138aa | OTTHUMP00000263563 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| SMG6-010 | OTTHUMT00000438474.6 | 652 | 208aa | OTTHUMP00000257434 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| SMG6-019 | OTTHUMT00000438481.2 | 592 | 163aa | OTTHUMP00000257436 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| SMG6-015 | OTTHUMT00000438480.2 | 588 | 164aa | OTTHUMP00000257435 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| SMG6-014 | OTTHUMT00000438482.2 | 574 | 162aa | OTTHUMP00000257437 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| SMG6-021 | OTTHUMT00000438893.2 | 572 | 123aa | OTTHUMP00000257641 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| SMG6-009 | OTTHUMT00000438478.3 | 557 | 124aa | OTTHUMP00000263564 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| SMG6-018 | OTTHUMT00000438479.3 | 551 | 115aa | OTTHUMP00000263565 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| SMG6-013 | OTTHUMT00000438483.2 | 547 | 119aa | OTTHUMP00000257438 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| SMG6-024 | OTTHUMT00000471423.1 | 3223 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
| SMG6-006 | OTTHUMT00000438486.3 | 2517 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
| SMG6-003 | OTTHUMT00000438056.2 | 4236 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| SMG6-004 | OTTHUMT00000438058.2 | 2426 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| SMG6-020 | OTTHUMT00000438472.1 | 902 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| SMG6-023 | OTTHUMT00000440550.1 | 601 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| SMG6-012 | OTTHUMT00000438473.1 | 552 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| SMG6-007 | OTTHUMT00000438475.2 | 546 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| SMG6-022 | OTTHUMT00000440549.1 | 2419 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| SMG6-011 | OTTHUMT00000438476.1 | 533 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - |
