Description
serrate RNA effector molecule homolog (Arabidopsis)
Location
Chromosome 7: 100,875,188-100,888,664 forward strand.
About this transcript
This transcript has 20 exons and is annotated with 19 domains and features.
Gene
This transcript is a product of gene OTTHUMG00000157031 Show transcript tableHide transcript table
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt | Flags |
|---|---|---|---|---|---|---|---|---|
| SRRT-002 | OTTHUMT00000347166.2 | 2964 | 875aa | OTTHUMP00000276011 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS47666 | - | |
| SRRT-001 | OTTHUMT00000347165.3 | 2955 | 872aa | OTTHUMP00000276010 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS47665 | - | |
| SRRT-004 | OTTHUMT00000347168.3 | 2905 | 876aa | OTTHUMP00000276014 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS34709 | Q9BXP5 | |
| SRRT-003 | OTTHUMT00000347167.3 | 2893 | 871aa | OTTHUMP00000276013 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS47667 | - | |
| SRRT-016 | OTTHUMT00000347180.1 | 1607 | 499aa | OTTHUMP00000211339 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | H7C3A1 | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| SRRT-018 | OTTHUMT00000347182.3 | 397 | 112aa | OTTHUMP00000211341 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| SRRT-007 | OTTHUMT00000347171.3 | 2902 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
| SRRT-017 | OTTHUMT00000347181.2 | 446 | 148aa | OTTHUMP00000211340 | Non stop decay | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| SRRT-019 | OTTHUMT00000347183.1 | 727 | 77aa | OTTHUMP00000211342 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| SRRT-006 | OTTHUMT00000347170.3 | 556 | 50aa | OTTHUMP00000276012 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | |
| SRRT-010 | OTTHUMT00000347174.1 | 448 | 47aa | OTTHUMP00000211338 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | H7C1K0 | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| SRRT-008 | OTTHUMT00000347172.1 | 726 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| SRRT-014 | OTTHUMT00000347178.1 | 655 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| SRRT-005 | OTTHUMT00000347169.2 | 582 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| SRRT-009 | OTTHUMT00000347173.1 | 575 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| SRRT-012 | OTTHUMT00000347176.1 | 563 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| SRRT-015 | OTTHUMT00000347179.1 | 540 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| SRRT-011 | OTTHUMT00000347175.1 | 378 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| SRRT-013 | OTTHUMT00000347177.1 | 376 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - |
