Transcript: COL9A1-002 OTTHUMT00000041132.3

Description

collagen, type IX, alpha 1

Location

Chromosome 6: 70,216,032-70,283,209 reverse strand.

About this transcript

This transcript has 32 exons and is annotated with 25 domains and features.

Gene

This transcript is a product of gene OTTHUMG00000014988 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt
COL9A1-001	OTTHUMT00000041131.2	4761	921aa	OTTHUMP00000016698	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS4971	P20849
COL9A1-002	OTTHUMT00000041132.3	3059	678aa	OTTHUMP00000016699	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS47447	-
COL9A1-004	OTTHUMT00000041134.1	1372	328aa	OTTHUMP00000016700	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-
COL9A1-009	OTTHUMT00000315865.1	1940	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
COL9A1-008	OTTHUMT00000315864.1	1844	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
COL9A1-010	OTTHUMT00000374944.1	699	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
COL9A1-007	OTTHUMT00000315863.2	690	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
COL9A1-005	OTTHUMT00000315861.2	1117	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
COL9A1-003	OTTHUMT00000041133.1	531	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
COL9A1-006	OTTHUMT00000315862.2	243	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 32 Transcript length: 3,059 bps Translation length: 678 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS47447

Class

Known protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 3, last modified on 28/02/2014 (Created on 23/05/2003)

Alternative symbols

RP1-138F4.2-002

Other assemblies

This transcript maps to 70,216,032-70,283,209 in GRCh38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENST00000320755

Curation Method

Manual annotation from Havana

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Recent locations

Transcript: COL9A1-002 OTTHUMT00000041132.3

Summary

Transcript-based displays