Transcript: NOD1-002 OTTHUMT00000328033.1

Description

nucleotide-binding oligomerization domain containing 1

Location

Chromosome 7: 30,424,530-30,478,738 reverse strand.

About this transcript

This transcript has 15 exons and is annotated with 15 domains and features.

Gene

This transcript is a product of gene OTTHUMG00000023923 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
NOD1-001	OTTHUMT00000250443.2	4499	953aa	OTTHUMP00000158742	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS5427	A0A024RA73
NOD1-004	OTTHUMT00000328035.1	794	59aa	OTTHUMP00000202485	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	Q7Z2K1	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
NOD1-005	OTTHUMT00000328036.1	757	59aa	OTTHUMP00000202486	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	Q7Z2K1	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
NOD1-006	OTTHUMT00000328037.2	637	59aa	OTTHUMP00000202487	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	Q7Z2K1	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
NOD1-007	OTTHUMT00000328038.2	578	45aa	OTTHUMP00000202488	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
NOD1-002	OTTHUMT00000328033.1	4610	779aa	OTTHUMP00000202484	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	G3XAL1
NOD1-003	OTTHUMT00000328034.1	3098	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
NOD1-008	OTTHUMT00000328039.1	905	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 15 Transcript length: 4,610 bps Translation length: 779 residues

Class

nonsense mediated decay [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 1, last modified on 28/02/2014 (Created on 28/04/2008)

Alternative symbols

AC006027.1-002

Other assemblies

This transcript maps to 30,424,530-30,478,738 in GRCh38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENST00000434755

Curation Method

Manual annotation from Havana

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Recent locations

Transcript: NOD1-002 OTTHUMT00000328033.1

Summary

Transcript-based displays