Transcript: ARID5A-001 OTTHUMT00000338888.2

Description

AT rich interactive domain 5A (MRF1-like)

Location

Chromosome 2: 96,536,749-96,552,638 forward strand.

About this transcript

This transcript has 7 exons and is annotated with 11 domains and features.

Gene

This transcript is a product of gene OTTHUMG00000155229 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt
ARID5A-004	OTTHUMT00000338891.3	3079	526aa	OTTHUMP00000207483	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS82484	C9J1Q0
ARID5A-001	OTTHUMT00000338888.2	2188	594aa	OTTHUMP00000207481	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS33251	Q03989
ARID5A-003	OTTHUMT00000338890.1	1996	No protein	-	<p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact	-	-
ARID5A-002	OTTHUMT00000338889.1	2038	58aa	OTTHUMP00000207482	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	-
ARID5A-005	OTTHUMT00000338892.1	2357	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
ARID5A-007	OTTHUMT00000338894.1	940	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
ARID5A-006	OTTHUMT00000338893.1	876	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 7 Transcript length: 2,188 bps Translation length: 594 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS33251

Class

Known protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 2, last modified on 09/07/2015 (Created on 21/10/2008)

Alternative symbols

AC013270.1-001

Other assemblies

This transcript maps to 96,536,749-96,552,638 in GRCh38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENST00000357485

Curation Method

Manual annotation from Havana

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Recent locations

Transcript: ARID5A-001 OTTHUMT00000338888.2

Summary

Transcript-based displays