Transcript: HMGCL-007 OTTHUMT00000372570.1

Description

3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase

Location

Chromosome 1: 23,801,887-23,825,428 reverse strand.

About this transcript

This transcript has 7 exons and is annotated with 8 domains and features.

Gene

This transcript is a product of gene OTTHUMG00000002963 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
HMGCL-002	OTTHUMT00000008253.2	1600	325aa	OTTHUMP00000003005	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS243	B1AK13
HMGCL-007	OTTHUMT00000372570.1	1354	254aa	OTTHUMP00000223529	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS53279	-
HMGCL-010	OTTHUMT00000372573.1	1101	182aa	OTTHUMP00000223530	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	H0Y2L7	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
HMGCL-001	OTTHUMT00000008252.2	2151	77aa	OTTHUMP00000003004	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	B1AK13
HMGCL-008	OTTHUMT00000372571.1	1379	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
HMGCL-006	OTTHUMT00000008257.2	858	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
HMGCL-003	OTTHUMT00000008254.1	594	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
HMGCL-004	OTTHUMT00000008255.1	463	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
HMGCL-009	OTTHUMT00000372572.1	2011	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 7 Transcript length: 1,354 bps Translation length: 254 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS53279

Class

Known protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 1, last modified on 27/02/2014 (Created on 14/12/2009)

Alternative symbols

RP5-886K2.8-007

Other assemblies

This transcript maps to 23,801,887-23,825,428 in GRCh38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENST00000436439

Curation Method

Manual annotation from Havana

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Recent locations

Transcript: HMGCL-007 OTTHUMT00000372570.1

Summary

Transcript-based displays